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Paleovirology

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is the study of viruses that existed in the past but are now extinct. In general, viruses cannot leave behind physical fossils, therefore indirect evidence is used to reconstruct the past. For example, viruses can cause evolution of their hosts, and the signatures of that evolution can be found and
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Although there is no formal classification system for EVEs, they are categorised according to the taxonomy of their viral origin. Indeed, all known viral genome types and replication strategies, as defined by the
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or NIRVs. Unlike other types of viral fossils, NIRV formation requires borrowing the integration machinery that is coded by the host genome or by a co-infecting retrovirus.
740: 162: 68:, have been found in the genomic fossil record. Acronyms have been designated to describe different types of viral fossil. 203: 91: 608: 73: 65: 32: 657: 638: 156: 40: 114:
Successful attempts to "resurrect" extinct viruses from the DNA fossils have been reported. In addition,
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interpreted in the present day. Also, some viral genetic fragments which were integrated into
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NIRV: Viral fossils originating from non-retroviral RNA viruses have been termed
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Yong, Ed (3 March 2014). "Giant virus resurrected from 69,000-year-old ice".
52: 48: 593: 542: 523: 491: 440: 403: 384: 352: 301: 235: 574: 227: 121: 24: 129: 507:"The evolution of novel fungal genes from non-retroviral RNA viruses" 44: 639:"Ancient "Fossil" Virus Shows Infection to Be Millions of Years Old" 419:"Endogenous viruses: Connecting recent and ancient viral evolution" 47:. The most surprising viral fossils originate from non-retroviral 27:
cells of an ancient organism have been passed down to our time as
609:"Heritable endogenization of an RNA virus in a mammalian species" 558:"Taming of the shrewd: novel eukaryotic genes from RNA viruses" 204:"Virus Silicification under Simulated Hot Spring Conditions" 315:
Katzourakis, Aris; Gifford, Robert J. (18 November 2010).
264:"Paleovirology – Modern Consequences of Ancient Viruses" 98:
Other viral fossils originate from DNA viruses such as
35:(EVEs). EVEs that originate from the integration of 713:"30,000-year-old giant virus 'comes back to life'" 257: 255: 253: 456:"Endogenous Viral Elements in Animal Genomes" 317:"Endogenous Viral Elements in Animal Genomes" 8: 454:Aris Katzourakis, Robert J. Gifford (2010). 417:Pakorn Aiewsakun, Aris Katzourakis (2015). 368:"The discovery of endogenous retroviruses" 623: 583: 573: 532: 522: 481: 471: 430: 393: 383: 342: 332: 291: 281: 658:"How to Resurrect an Extinct Retrovirus" 194: 202:Laidler, J.R.; Stedman, K.M. (2010). 92:Non-retroviral Integrated RNA Viruses 7: 120:was revived from a 30,000-year-old 14: 505:Taylor, D. J.; J. Bruenn (2009). 262:Emerman, M.; Malik, H.S. (2010). 163:Invertebrate iridescent virus 31 1: 473:10.1371/journal.pgen.1001191 334:10.1371/journal.pgen.1001191 283:10.1371/journal.pbio.1000301 16:The study of ancient viruses 432:10.1016/j.virol.2015.02.011 86:Human Endogenous Retrovirus 757: 741:Subfields of paleontology 687:10.1038/nature.2014.14801 625:10.1101/2020.01.19.911933 366:Weiss, RA (Oct 3, 2006). 33:endogenous viral elements 74:Endogenous viral element 66:Baltimore classification 641:, by Katherine Harmon, 157:Insertional mutagenesis 102:(a group that includes 41:endogenous retroviruses 524:10.1186/1741-7007-7-88 385:10.1186/1742-4690-3-67 575:10.1186/1741-7007-8-2 228:10.1089/ast.2010.0463 147:Endogenous retrovirus 80:Endogenous retrovirus 607:Lida, Atsuo (2020). 184:Viral eukaryogenesis 152:Human Genome Project 117:Pithovirus sibericum 663:Scientific American 644:Scientific American 556:Koonin, E. (2010). 220:2010AsBio..10..569L 648:September 29, 2010 425:. 479–480: 26–37. 169:Micropaleontology 748: 721: 720: 711:(3 March 2014). 709:Morelle, Rebecca 705: 699: 698: 674: 668: 667:November 2, 2006 655: 649: 636: 630: 629: 627: 613: 604: 598: 597: 587: 577: 553: 547: 546: 536: 526: 502: 496: 495: 485: 475: 466:(11): e1001191. 451: 445: 444: 434: 414: 408: 407: 397: 387: 363: 357: 356: 346: 336: 327:(11): e1001191. 312: 306: 305: 295: 285: 259: 248: 247: 199: 756: 755: 751: 750: 749: 747: 746: 745: 726: 725: 724: 707: 706: 702: 676: 675: 671: 656: 652: 637: 633: 611: 606: 605: 601: 555: 554: 550: 504: 503: 499: 453: 452: 448: 416: 415: 411: 365: 364: 360: 314: 313: 309: 276:(2): e1000301. 261: 260: 251: 201: 200: 196: 192: 138: 124:harvested from 112: 61: 17: 12: 11: 5: 754: 752: 744: 743: 738: 728: 727: 723: 722: 700: 669: 650: 631: 599: 548: 497: 446: 409: 358: 307: 249: 214:(6): 569–576. 193: 191: 188: 187: 186: 181: 176: 171: 166: 159: 154: 149: 144: 137: 134: 111: 108: 100:hepadnaviruses 96: 95: 88: 82: 76: 60: 57: 15: 13: 10: 9: 6: 4: 3: 2: 753: 742: 739: 737: 734: 733: 731: 718: 714: 710: 704: 701: 696: 692: 688: 684: 680: 673: 670: 666: 664: 659: 654: 651: 647: 645: 640: 635: 632: 626: 621: 617: 610: 603: 600: 595: 591: 586: 581: 576: 571: 567: 563: 559: 552: 549: 544: 540: 535: 530: 525: 520: 516: 512: 508: 501: 498: 493: 489: 484: 479: 474: 469: 465: 461: 457: 450: 447: 442: 438: 433: 428: 424: 420: 413: 410: 405: 401: 396: 391: 386: 381: 377: 373: 372:Retrovirology 369: 362: 359: 354: 350: 345: 340: 335: 330: 326: 322: 321:PLOS Genetics 318: 311: 308: 303: 299: 294: 289: 284: 279: 275: 271: 270: 265: 258: 256: 254: 250: 245: 241: 237: 233: 229: 225: 221: 217: 213: 209: 205: 198: 195: 189: 185: 182: 180: 179:Paleogenetics 177: 175: 172: 170: 167: 165: 164: 160: 158: 155: 153: 150: 148: 145: 143: 140: 139: 135: 133: 131: 127: 123: 119: 118: 109: 107: 105: 101: 93: 89: 87: 83: 81: 77: 75: 71: 70: 69: 67: 58: 56: 54: 50: 46: 42: 39:are known as 38: 34: 30: 29:viral fossils 26: 21: 20:Paleovirology 716: 703: 678: 672: 661: 653: 642: 634: 615: 602: 565: 561: 551: 514: 510: 500: 463: 459: 449: 422: 412: 375: 371: 361: 324: 320: 310: 273: 269:PLOS Biology 267: 211: 208:Astrobiology 207: 197: 174:Paleobiology 161: 116: 113: 110:Resurrection 97: 62: 37:retroviruses 28: 19: 18: 562:BMC Biology 511:BMC Biology 142:Ancient DNA 104:hepatitis B 59:Terminology 53:RNA viruses 730:Categories 460:PLOS Genet 190:References 132:, Russia. 126:permafrost 736:Virology 717:BBC News 695:87146458 594:20067611 543:20021636 492:21124940 441:25771486 423:J. Virol 404:17018135 353:21124940 302:20161719 236:20735248 136:See also 122:ice core 25:germline 616:bioRxiv 585:2823675 534:2805616 483:2987831 395:1617120 344:2987831 293:2817711 244:7274625 216:Bibcode 130:Siberia 45:fossils 693:  679:Nature 592:  582:  541:  531:  517:: 88. 490:  480:  439:  402:  392:  378:: 67. 351:  341:  300:  290:  242:  234:  84:HERV: 691:S2CID 612:(PDF) 568:: 2. 240:S2CID 78:ERV: 72:EVE: 31:, or 590:PMID 539:PMID 488:PMID 437:PMID 400:PMID 349:PMID 298:PMID 232:PMID 51:and 683:doi 620:doi 580:PMC 570:doi 529:PMC 519:doi 478:PMC 468:doi 427:doi 390:PMC 380:doi 339:PMC 329:doi 288:PMC 278:doi 224:doi 128:in 106:). 49:DNA 732:: 715:. 689:. 681:. 660:, 618:. 614:. 588:. 578:. 564:. 560:. 537:. 527:. 513:. 509:. 486:. 476:. 462:. 458:. 435:. 421:. 398:. 388:. 374:. 370:. 347:. 337:. 323:. 319:. 296:. 286:. 272:. 266:. 252:^ 238:. 230:. 222:. 212:10 210:. 206:. 55:. 719:. 697:. 685:: 665:, 646:, 628:. 622:: 596:. 572:: 566:8 545:. 521:: 515:7 494:. 470:: 464:6 443:. 429:: 406:. 382:: 376:3 355:. 331:: 325:6 304:. 280:: 274:8 246:. 226:: 218::

Index

germline
endogenous viral elements
retroviruses
endogenous retroviruses
fossils
DNA
RNA viruses
Baltimore classification
Endogenous viral element
Endogenous retrovirus
Human Endogenous Retrovirus
Non-retroviral Integrated RNA Viruses
hepadnaviruses
hepatitis B
Pithovirus sibericum
ice core
permafrost
Siberia
Ancient DNA
Endogenous retrovirus
Human Genome Project
Insertional mutagenesis
Invertebrate iridescent virus 31
Micropaleontology
Paleobiology
Paleogenetics
Viral eukaryogenesis
"Virus Silicification under Simulated Hot Spring Conditions"
Bibcode
2010AsBio..10..569L

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